PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676736100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 517aa    MW: 57383.1 Da    PI: 6.1705
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676736100genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.6e-07261282223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C++Cgk F+r  nL+ H+r H
  676736100 261 FCTICGKGFKRDANLRMHMRGH 282
                6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.32E-5258285No hitNo description
SMARTSM003550.0026260282IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03260287IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-6261313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
SMARTSM0035550311344IPR015880Zinc finger, C2H2-like
SMARTSM0035545349371IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
METEDDLCHN NWGSSSCSSK LREPVCFTSQ QKWEDASILD YEMGMEEPDL QVFDQMKATS  60
GQDDNNSNNG QANADFLQGV KAQAWDPRTM LSNLSFMEQK IHELQDLVHL IVGRNGQLHG  120
RQDELVAQQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STTPGPFTGQ PGSAMFPYPR  180
EANNVASQSQ NNNNNNNRGA VQEFDFPKPI VVDERERESH VVEEHEMKDE DDAEEGENLP  240
PGSYEILQLE KEEILAPHTH FCTICGKGFK RDANLRMHMR GHGDEYKTPA ALAKPNKETV  300
PGSEPMLIKR YSCPFPGCKR NKDHKKFQPL KTILCVKNHY KRTHCDKSFT CSRCHTKKFS  360
VIADLKTHEK HCGKNKWLCS CGTTFSRKDK LFGHISLFQG HTPAIPLEET KPSAGASAQR  420
GSFDCGNNNN AGMVDFNLGS ATTANQETAQ PGFMDGKISF EDSFSPLSFD TCTFGGFHEF  480
PRPMLDDSVS SFQILISSAC GFSPRNGGGG SVSNTSL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891100.10.0zinc finger family protein
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLD7KK610.0D7KK61_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.1__3547__AT1G34370.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69772644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.20.0C2H2 family protein